Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs12520121 | chr5:156008760 | G/A | 9.87E-5 | 407 | 15.38 | 15.32 | 11.63 | KM Plot |
| LGG | rs12521289 | chr5:93997344 | A/G | 4.32E-5 | 407 | 14.78 | 17.63 | 9.8 | KM Plot |
| LGG | rs12521822 | chr5:155965947 | T/G | 5.21E-6 | 406 | 15.57 | 15.17 | 15.37 | KM Plot |
| LGG | rs12522361 | chr5:156037737 | A/G | 4.58E-5 | 407 | 16.73 | 14.12 | 10.53 | KM Plot |
| LGG | rs1254564 | chr14:52822465 | C/T | 2.86E-5 | 407 | 5.85 | 9.65 | 15.73 | KM Plot |
| LGG | rs12555547 | chr9:22072040 | C/G | 3.71E-10 | 407 | 11.2 | 11.63 | 15.35 | KM Plot |
| LGG | rs12570383 | chr10:106038707 | A/G | 7.03E-11 | 407 | 0 | 16.47 | 15.23 | KM Plot |
| LGG | rs12571973 | chr10:33443078 | G/C | 0 | 395 | 14.93 | 18.55 | 4.6 | KM Plot |
| LGG | rs12581851 | chr12:102233423 | A/T | 4.71E-5 | 407 | 14.37 | 18.7 | 21.6 | KM Plot |
| LGG | rs12624725 | chr20:43752056 | A/T | 4.45E-7 | 399 | 15.3 | 19.17 | 7.13 | KM Plot |
| LGG | rs12627273 | chr21:45581986 | G/A | 8.48E-5 | 402 | 4.98 | 15.57 | 15.37 | KM Plot |
| LGG | rs12636130 | chr3:168542733 | G/A | 2.89E-5 | 406 | 15.57 | 13.7 | 4.1 | KM Plot |
| LGG | rs12645237 | chr4:167088584 | G/A | 9.31E-5 | 395 | 12.9 | 16.47 | 14.85 | KM Plot |
| LGG | rs12653594 | chr5:93964009 | A/G | 4.34E-5 | 405 | 14.8 | 17.73 | 9.8 | KM Plot |
| LGG | rs12653819 | chr5:93908472 | T/C | 4.85E-5 | 401 | 14.78 | 17.9 | 9.8 | KM Plot |